This is FROGS version 2.0.0 Galaxy Wrappers FROGS: Find Rapidly OTUs through Galaxy Solution Authors: Valentin Marcon (valentin.marcon[a]inra.fr) Olivier Inizan (olivier.inizan[a]inra.fr) Laure Quintric (laure.quintric[a]ifremer.fr) Patrick Durand (pgdurand[a]ifremer.fr) Maria Bernard (maria.bernard[a]inra.fr) GĂ©raldine Pascal (geraldine.pascal[a]inra.fr) |
hg clone https://toolshed.g2.bx.psu.edu/repos/frogs/frogs_2_0_0
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
with bar plot and composition plot | 1.0.0 | 16.01 | |
Converts a FROGS BIOM in fully compatible BIOM. | 1.1.0 | 16.01 | |
Filters OTUs on several criteria. | 1.3.0 | 16.01 | |
distance matrix | 1.0.0 | 16.01 | |
Step 1 in metagenomics analysis: denoising and dereplication. | 2.0.1 | 16.01 | |
with richness plot | 1.0.0 | 16.01 | |
from 3 files: biomfile, samplefile, treefile | 1.0.0 | 16.01 | |
Converts a TSV file in a BIOM file. | 2.0.0 | 16.01 | |
Step 2 in metagenomics analysis : clustering. | 2.3.0 | 16.01 | |
of samples using different linkage methods | 1.0.0 | 16.01 | |
Step 4 in metagenomics analysis : Taxonomic affiliation of each OTU's seed by RDPtools and BLAST | 0.8.0 | 16.01 | |
Attribute reads to samples in function of inner barcode. | 2.0.0 | 16.01 | |
with heatmap plot and ordination plot | 1.0.0 | 16.01 | |
Process some metrics on clusters. | 1.4.0 | 16.01 | |
Process some metrics on taxonomies. | 1.1.0 | 16.01 | |
Converts a BIOM file in TSV file. | 2.1.0 | 16.01 | |
Reconstruction of phylogenetic tree | 1.0.0 | 16.01 | |
Normalize OTUs abundance. | 2.0.0 | 16.01 | |
perform Multivariate Analysis of Variance (MANOVA) | 1.0.0 | 16.01 | |
Step 3 in metagenomics analysis : Remove PCR chimera in each sample. | 1.3.0 | 16.01 |