| GEMINI (GEnome MINIng) is designed to be a flexible framework for exploring genetic variation in the context of the wealth of genome annotations available for the human genome. By placing genetic variants, sample genotypes, and useful genome annotations into an integrated database framework, GEMINI provides a simple, flexible, yet very powerful system for exploring genetic variation for for disease and population genetics. Repository-Maintainer: Björn Grüning Repository-Development: https://github.com/bgruening/galaxytools/ |
| Repository package_gemini_0_10_0 revision 47251581daf6 owned by iuc |
| Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required) |
| Repository package_grabix_0_1_3 revision 0714d88bd854 owned by iuc (prior install required) |
| Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc (prior install required) |
| Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam (prior install required) |
| Repository package_bedtools_2_19 revision fb3a854c7104 owned by iuc (prior install required) |
| Repository package_grabix_0_1_3 revision 0714d88bd854 owned by iuc (prior install required) |
| Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc (prior install required) |
| Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam |
| Repository package_bedtools_2_19 revision fb3a854c7104 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| bedtools | 2.19.1 | package | |
| gemini | 0.10.0 | package | |
| grabix | 0.1.3 | package | |
| samtools | 0.1.19 | package | |
| tabix | 0.2.6 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Querying the GEMINI database | 0.10.1.0 | any | |
| Loading a VCF file into GEMINI | 0.10.1.0 | any | |
| perform sample-wise gene-level burden calculations | 0.10.1.0 | any | |
| Find genes among variants that are interacting partners | 0.10.1.0 | any | |
| adding your own custom annotations | 0.10.1.0 | any | |
| List the gemini database tables and columns | 0.10.1.0 | any | |
| Conducting analyses on genome "windows" | 0.10.1.0 | any | |
| Identifying potential compound heterozygotes | 0.10.1.0 | any | |
| Filter LoF variants by transcript position and type | 0.10.1.0 | any | |
| Find variants meeting an autosomal recessive/dominant model | 0.10.1.0 | any | |
| Extracting variants from specific regions or genes | 0.10.1.0 | any | |
| Identifying potential de novo mutations | 0.10.1.0 | any | |
| Map genes and variants to KEGG pathways | 0.10.1.0 | any | |
| Compute useful variant statistics | 0.10.1.0 | any | |
| Identifying runs of homozygosity | 0.10.1.0 | any | |