| Sequence Analysis toolkit provides several small utilities for working with FastA and FastQ data. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seqtk
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| get the nucleotide composition of FASTA/Q | 1.4+galaxy0 | 22.05 | |
| cut sequence at long N | 1.4+galaxy0 | 22.05 | |
| drop unpaired from interleaved Paired End FASTA/Q | 1.4+galaxy0 | 22.05 | |
| fastq QC (base/quality summary) | 1.4+galaxy0 | 22.05 | |
| regional heterozygosity | 1.4+galaxy0 | 22.05 | |
| extract the position of each het | 1.4+galaxy0 | 22.05 | |
| Merge two FASTA/Q files into a FASTA file output | 1.4+galaxy1 | 22.05 | |
| interleave two unpaired FASTA/Q files for a paired-end file | 1.4+galaxy0 | 22.05 | |
| point mutate FASTA at specified positions | 1.4+galaxy0 | 22.05 | |
| choose a random base from hets | 1.4+galaxy0 | 22.05 | |
| random subsample of fasta or fastq sequences | 1.4+galaxy0 | 22.05 | |
| common transformation of FASTA/Q | 1.4+galaxy1 | 22.05 | |
| extract subsequences from FASTA/Q files | 1.4+galaxy0 | 22.05 | |
| find telomeres | 1.4+galaxy0 | 22.05 | |
| trim FASTQ using the Phred algorithm | 1.4+galaxy0 | 22.05 | |